IQ-TREE multicore version 1.6.12 for Linux 64-bit built Aug 15 2019
Developed by Bui Quang Minh, Nguyen Lam Tung, Olga Chernomor,
Heiko Schmidt, Dominik Schrempf, Michael Woodhams.

Host:    fermat (AVX2, FMA3, 1009 GB RAM)
Command: ../../iqtree -s Pettalidae_18S_mafft_gblocks.fasta -m TESTNEW -bb 1000 -alrt 1000
Seed:    59990 (Using SPRNG - Scalable Parallel Random Number Generator)
Time:    Wed Jun 15 22:54:15 2022
Kernel:  AVX+FMA - 1 threads (128 CPU cores detected)

HINT: Use -nt option to specify number of threads because your CPU has 128 cores!
HINT: -nt AUTO will automatically determine the best number of threads to use.

Reading alignment file Pettalidae_18S_mafft_gblocks.fasta ... Fasta format detected
Alignment most likely contains DNA/RNA sequences
Alignment has 123 sequences with 1762 columns, 219 distinct patterns
66 parsimony-informative, 132 singleton sites, 1564 constant sites
                                             Gap/Ambiguity  Composition  p-value
   1  Limulus_polyphemus                             0.17%    passed     97.80%
   2  Metasiro_savannahensis_MCZ-134557              0.96%    passed     99.57%
   3  Cyphophthalmus_duricorius_MCZ-135009           0.00%    passed     99.88%
   4  Parasiro_coiffaiti_MCZ-132372                  0.00%    passed     99.39%
   5  Parasiro_minor_MCZ-132374                      0.00%    passed     99.39%
   6  Paramiopsalis_ramulosus_MCZ-135006             0.06%    passed     99.80%
   7  Siro_rubens_MCZ-132391                         0.34%    passed     99.81%
   8  Siro_exilis_MCZ-134551                         0.06%    passed     98.13%
   9  Suzukielus_sauteri_MCZ-132256                  0.00%    passed     92.90%
  10  Aoraki_westlandica_MCZ-134653                  1.14%    passed     99.85%
  11  Aoraki_crypta_MCZ-101289                       0.00%    passed     99.99%
  12  Aoraki_denticulata_denticulata_MCZ-134642      3.86%    passed     99.14%
  13  Aoraki_denticulata_denticulata_MCZ-134647_1    0.00%    passed     99.97%
  14  Aoraki_denticulata_denticulata_MCZ-134639_1    0.00%    passed     99.98%
  15  Aoraki_denticulata_denticulata_MCZ-134646      0.00%    passed     99.97%
  16  Aoraki_denticulata_major_MCZ-35669             0.00%    passed     99.97%
  17  Aoraki_denticulata_major_MCZ-134644            0.17%    passed     99.88%
  18  Aoraki_grandis_MCZ-134652                      0.00%    passed     99.99%
  19  Aoraki_granulosa_MCZ-134675                    1.82%    passed     99.72%
  20  Aoraki_granulosa_MCZ-134684                    0.00%    passed     99.97%
  21  Aoraki_healyi_MCZ-134638                       0.00%    passed     99.99%
  22  Aoraki_inerma_MCZ-134648                       0.00%    passed     99.99%
  23  Aoraki_longitarsa_MCZ-35659                    0.00%    passed     99.97%
  24  Aoraki_longitarsa_MCZ-35660                    0.00%    passed     99.97%
  25  Aoraki_longitarsa_MCZ-1346566_1                0.06%    passed     99.90%
  26  Aoraki_longitarsa_MCZ-134656_2                 0.00%    passed     99.97%
  27  Aoraki_longitarsa_CMNZ                         0.00%    passed     99.97%
  28  Aoraki_tumidata_MCZ-133838                     0.00%    passed     99.99%
  29  Aoraki_cf_tumidata_DOC094                      0.06%    passed     99.98%
  30  Archaeopurcellia_eureka_MCZ-162243             0.34%    passed     99.99%
  31  Archaeopurcellia_eureka_MCZ-162249             0.34%    passed     99.99%
  32  Austropurcellia_acuta_MCZ-134701               0.00%    passed     99.91%
  33  Austropurcellia_arcticosa_MCZ-132325          26.16%    passed     74.45%
  34  Austropurcellia_cadens_CASENT9035046           2.33%    passed     99.07%
  35  Austropurcellia_clousei_MCZ-132339             4.26%    passed     97.72%
  36  Austropurcellia_culminis_MCZ-132322            3.35%    passed     98.84%
  37  Austropurcellia_daviesae_MCZ-132323            2.33%    passed     99.07%
  38  Austropurcellia_despectata_MCZ-132324          2.33%    passed     99.07%
  39  Austropurcellia_giribeti_MCZ-132337            0.00%    passed     99.97%
  40  Austropurcellia_giribeti_MCZ-134696            0.00%    passed     99.97%
  41  Austropurcellia_scoparia_MCZ-134700            1.36%    passed     99.94%
  42  Austropurcellia_sharmai_MCZ-134698             0.00%    passed     99.92%
  43  Austropurcellia_tholei_MCZ-134697              0.00%    passed     99.97%
  44  Austropurcellia_vicina_MCZ-132318              3.23%    passed     97.77%
  45  Austropurcellia_vicina_MCZ-132334              0.00%    passed     99.87%
  46  Chileogovea_jocasta_MCZ-134713                 0.00%    passed     99.89%
  47  Chileogovea_jocasta_MCZ-134714                 0.00%    passed     99.97%
  48  Chileogovea_jocasta_MCZ-134715                 0.11%    passed     99.94%
  49  Chileogovea_oedipus_MCZ-134709                 0.00%    passed     99.97%
  50  Chileogovea_oedipus_MCZ-134710                 0.00%    passed    100.00%
  51  Chileogovea_oedipus_MCZ-134711                 0.00%    passed    100.00%
  52  Chileogovea_oedipus_MCZ-134712                 0.00%    passed     99.97%
  53  Karripurcellia_harveyi_MCZ-132345              0.00%    passed     99.04%
  54  Karripurcellia_peckorum_MCZ-134719             0.06%    passed     99.48%
  55  Karripurcellia_peckorum_MCZ-134720             0.00%    passed     99.04%
  56  Karripurcellia_peckorum_MCZ-134721             0.00%    passed     99.04%
  57  Karripurcellia_peckorum_MCZ-134725             0.00%    passed     99.04%
  58  Karripurcellia_peckorum_MCZ-134726             0.00%    passed     99.90%
  59  Neopurcellia_salmoni_MCZ-29317                 0.06%    passed     99.97%
  60  Neopurcellia_salmoni_MCZ-134739                0.00%    passed     99.94%
  61  Neopurcellia_salmoni_MCZ-134741                0.00%    passed     99.94%
  62  Parapurcellia_amatola_MCZ-133841               0.00%    passed     99.99%
  63  Parapurcellia_convexa_MCZ-134744               0.00%    passed     99.93%
  64  Parapurcellia_convexa_MCZ-128902               0.00%    passed     99.93%
  65  Parapurcellia_fissa_MCZ-134745                 0.00%    passed     99.98%
  66  Parapurcellia_minuta_MCZ-134747                0.00%    passed     99.98%
  67  Parapurcellia_monticola_MCZ-60357_1            0.00%    passed     99.93%
  68  Parapurcellia_monticola_MCZ-60357_2            0.00%    passed     99.93%
  69  Parapurcellia_monticola_MCZ-134751             0.00%    passed     99.89%
  70  Parapurcellia_peregrinator_MCZ-128901          0.00%    passed     99.79%
  71  Parapurcellia_rumpiana_MCZ-134748              0.00%    passed     99.98%
  72  Parapurcellia_silvicola_MCZ-134742_1           0.06%    passed     99.94%
  73  Parapurcellia_silvicola_MCZ-134742_2           0.00%    passed     99.93%
  74  Parapurcellia_staregai_MCZ-134746              0.00%    passed     99.98%
  75  Purcellia_sp_MCZ-128897                        0.00%    passed     99.98%
  76  Parapurcellia_nsp_Limpopo_MCZ-128900          26.16%    passed     76.38%
  77  Pettalus_thwaitesi_DNA101223                   0.00%    passed     99.92%
  78  Pettalus_sp_MCZ-132353                         0.00%    passed     99.93%
  79  Pettalus_sp_MCZ-132354                         0.00%    passed     99.98%
  80  Pettalus_sp_MCZ-132356                         0.00%    passed     99.92%
  81  Pettalus_sp_MCZ-132357                         0.00%    passed     99.98%
  82  Pettalus_sp_MCZ-132359                         0.00%    passed     99.92%
  83  Pettalus_sp_MCZ-132360                         0.00%    passed     99.98%
  84  Pettalus_sp_MCZ-134967                         0.00%    passed     99.86%
  85  Purcellia_argasiformis_MCZ-134759              0.00%    passed     99.98%
  86  Purcellia_argasiformis_MCZ-134762              0.00%    passed     99.98%
  87  Purcellia_griswoldi_MCZ-128898                 0.00%    passed     99.98%
  88  Purcellia_griswoldi_MCZ-134756                 0.00%    passed     99.98%
  89  Purcellia_illustrans_MCZ-60635                 0.00%    passed     99.98%
  90  Purcellia_illustrans_MCZ-128896                0.00%    passed     99.98%
  91  Purcellia_illustrans_MCZ-134753                0.00%    passed     99.98%
  92  Purcellia_illustrans_MCZ-134754                0.00%    passed     99.96%
  93  Purcellia_leleupi_MCZ-129098                   0.00%    passed     99.98%
  94  Purcellia_sp_129493                            0.00%    passed     99.98%
  95  Purcellia_sp_129494                            0.00%    passed    100.00%
  96  Rakaia_antipodiana_MCZ-134580                  0.11%    passed     99.95%
  97  Rakaia_australis_MCZ-134592                    0.00%    passed     99.89%
  98  Rakaia_collaris_MCZ-134574                     1.36%    passed     99.92%
  99  Rakaia_digitata_MCZ-134571                     0.06%    passed     99.97%
 100  Rakaia_dorothea_MCZ-134577                     0.00%    passed     99.95%
 101  Rakaia_florensis_MCZ-134588                    0.00%    passed     99.99%
 102  Rakaia_lindsayi_MCZ-134598                     0.00%    passed     99.98%
 103  Rakaia_macra_MCZ-134582                        0.74%    passed     99.65%
 104  Rakaia_media_MCZ-134581                        0.00%    passed     99.68%
 105  Rakaia_media_MCZ-134605                        0.00%    passed     99.40%
 106  Rakaia_minutissima_MCZ-29280                  25.99%    passed     79.41%
 107  Rakaia_minutissima_MCZ-134591                  0.00%    passed     99.99%
 108  Rakaia_pauli_MCZ-134576                        0.00%    passed     99.95%
 109  Rakaia_solitaria_MCZ-134585                    0.00%    passed     99.88%
 110  Rakaia_sorenseni_MCZ-134567                    0.00%    passed     99.96%
 111  Rakaia_stewartiensis_MCZ-134599                0.00%    passed     99.98%
 112  Rakaia_uniloca_MCZ-134583                      0.00%    passed    100.00%
 113  Rakaia_uniloca_MCZ-134600                      0.00%    passed     99.89%
 114  Rakaia_sp_MCZ-35662                            0.00%    passed     99.96%
 115  Rakaia_sp_MCZ-35668                            0.00%    passed     99.95%
 116  Rakaia_sp_MCZ-100753                           0.00%    passed     99.40%
 117  Rakaia_sp_MCZ-129612                           0.00%    passed     99.95%
 118  Rakaia_sp_MCZ-129614                           0.00%    passed     99.87%
 119  Rakaia_sp_MCZ-133847                           0.00%    passed     99.95%
 120  Rakaia_sp_MCZ-133849                           0.00%    passed     99.47%
 121  Rakaia_sp_MCZ-134568                           0.11%    passed     99.97%
 122  Rakaia_sp_MCZ-134575                           2.61%    passed     98.66%
 123  Rakaia_sp_MCZ-134584                           0.00%    passed     99.95%
****  TOTAL                                          0.91%  0 sequences failed composition chi2 test (p-value<5%; df=3)
NOTE: Aoraki_grandis_MCZ-134652 is identical to Aoraki_crypta_MCZ-101289 but kept for subsequent analysis
NOTE: Aoraki_denticulata_denticulata_MCZ-134646 is identical to Aoraki_denticulata_denticulata_MCZ-134647_1 but kept for subsequent analysis
NOTE: Archaeopurcellia_eureka_MCZ-162249 is identical to Archaeopurcellia_eureka_MCZ-162243 but kept for subsequent analysis
NOTE: Austropurcellia_daviesae_MCZ-132323 is identical to Austropurcellia_cadens_CASENT9035046 but kept for subsequent analysis
NOTE: Austropurcellia_giribeti_MCZ-134696 is identical to Austropurcellia_giribeti_MCZ-132337 but kept for subsequent analysis
NOTE: Chileogovea_oedipus_MCZ-134709 is identical to Chileogovea_jocasta_MCZ-134714 but kept for subsequent analysis
NOTE: Chileogovea_oedipus_MCZ-134711 is identical to Chileogovea_oedipus_MCZ-134710 but kept for subsequent analysis
NOTE: Karripurcellia_peckorum_MCZ-134720 is identical to Karripurcellia_harveyi_MCZ-132345 but kept for subsequent analysis
NOTE: Neopurcellia_salmoni_MCZ-134741 is identical to Neopurcellia_salmoni_MCZ-134739 but kept for subsequent analysis
NOTE: Parapurcellia_convexa_MCZ-128902 is identical to Parapurcellia_convexa_MCZ-134744 but kept for subsequent analysis
NOTE: Parapurcellia_rumpiana_MCZ-134748 is identical to Parapurcellia_fissa_MCZ-134745 but kept for subsequent analysis
NOTE: Parapurcellia_staregai_MCZ-134746 is identical to Parapurcellia_minuta_MCZ-134747 but kept for subsequent analysis
NOTE: Purcellia_argasiformis_MCZ-134759 is identical to Purcellia_sp_MCZ-128897 but kept for subsequent analysis
NOTE: Pettalus_sp_MCZ-132356 is identical to Pettalus_thwaitesi_DNA101223 but kept for subsequent analysis
NOTE: Pettalus_sp_MCZ-132357 is identical to Pettalus_sp_MCZ-132354 but kept for subsequent analysis
NOTE: Rakaia_pauli_MCZ-134576 is identical to Rakaia_dorothea_MCZ-134577 but kept for subsequent analysis
NOTE: Rakaia_minutissima_MCZ-134591 is identical to Rakaia_florensis_MCZ-134588 but kept for subsequent analysis
NOTE: Rakaia_stewartiensis_MCZ-134599 is identical to Rakaia_lindsayi_MCZ-134598 but kept for subsequent analysis
NOTE: Rakaia_sp_MCZ-100753 is identical to Rakaia_media_MCZ-134605 but kept for subsequent analysis
NOTE: Rakaia_sp_MCZ-35662 is identical to Rakaia_sorenseni_MCZ-134567 but kept for subsequent analysis
NOTE: 28 identical sequences (see below) will be ignored for subsequent analysis
NOTE: Aoraki_healyi_MCZ-134638 (identical to Aoraki_crypta_MCZ-101289) is ignored but added at the end
NOTE: Aoraki_inerma_MCZ-134648 (identical to Aoraki_crypta_MCZ-101289) is ignored but added at the end
NOTE: Aoraki_tumidata_MCZ-133838 (identical to Aoraki_crypta_MCZ-101289) is ignored but added at the end
NOTE: Aoraki_denticulata_major_MCZ-35669 (identical to Aoraki_denticulata_denticulata_MCZ-134647_1) is ignored but added at the end
NOTE: Aoraki_longitarsa_MCZ-35659 (identical to Aoraki_denticulata_denticulata_MCZ-134647_1) is ignored but added at the end
NOTE: Aoraki_longitarsa_MCZ-35660 (identical to Aoraki_denticulata_denticulata_MCZ-134647_1) is ignored but added at the end
NOTE: Aoraki_longitarsa_MCZ-134656_2 (identical to Aoraki_denticulata_denticulata_MCZ-134647_1) is ignored but added at the end
NOTE: Aoraki_longitarsa_CMNZ (identical to Aoraki_denticulata_denticulata_MCZ-134647_1) is ignored but added at the end
NOTE: Austropurcellia_despectata_MCZ-132324 (identical to Austropurcellia_cadens_CASENT9035046) is ignored but added at the end
NOTE: Chileogovea_oedipus_MCZ-134712 (identical to Chileogovea_jocasta_MCZ-134714) is ignored but added at the end
NOTE: Karripurcellia_peckorum_MCZ-134721 (identical to Karripurcellia_harveyi_MCZ-132345) is ignored but added at the end
NOTE: Karripurcellia_peckorum_MCZ-134725 (identical to Karripurcellia_harveyi_MCZ-132345) is ignored but added at the end
NOTE: Parapurcellia_monticola_MCZ-60357_1 (identical to Parapurcellia_convexa_MCZ-134744) is ignored but added at the end
NOTE: Parapurcellia_monticola_MCZ-60357_2 (identical to Parapurcellia_convexa_MCZ-134744) is ignored but added at the end
NOTE: Parapurcellia_silvicola_MCZ-134742_2 (identical to Parapurcellia_convexa_MCZ-134744) is ignored but added at the end
NOTE: Purcellia_argasiformis_MCZ-134762 (identical to Purcellia_sp_MCZ-128897) is ignored but added at the end
NOTE: Purcellia_griswoldi_MCZ-128898 (identical to Purcellia_sp_MCZ-128897) is ignored but added at the end
NOTE: Purcellia_griswoldi_MCZ-134756 (identical to Purcellia_sp_MCZ-128897) is ignored but added at the end
NOTE: Purcellia_illustrans_MCZ-60635 (identical to Purcellia_sp_MCZ-128897) is ignored but added at the end
NOTE: Purcellia_illustrans_MCZ-128896 (identical to Purcellia_sp_MCZ-128897) is ignored but added at the end
NOTE: Purcellia_illustrans_MCZ-134753 (identical to Purcellia_sp_MCZ-128897) is ignored but added at the end
NOTE: Purcellia_leleupi_MCZ-129098 (identical to Purcellia_sp_MCZ-128897) is ignored but added at the end
NOTE: Purcellia_sp_129493 (identical to Purcellia_sp_MCZ-128897) is ignored but added at the end
NOTE: Pettalus_sp_MCZ-132360 (identical to Pettalus_sp_MCZ-132354) is ignored but added at the end
NOTE: Rakaia_sp_MCZ-35668 (identical to Rakaia_dorothea_MCZ-134577) is ignored but added at the end
NOTE: Rakaia_sp_MCZ-129612 (identical to Rakaia_dorothea_MCZ-134577) is ignored but added at the end
NOTE: Rakaia_sp_MCZ-133847 (identical to Rakaia_dorothea_MCZ-134577) is ignored but added at the end
NOTE: Rakaia_sp_MCZ-134584 (identical to Rakaia_dorothea_MCZ-134577) is ignored but added at the end

For your convenience alignment with unique sequences printed to Pettalidae_18S_mafft_gblocks.fasta.uniqueseq.phy


Create initial parsimony tree by phylogenetic likelihood library (PLL)... 0.003 seconds
NOTE: ModelFinder requires 7 MB RAM!
ModelFinder will test 286 DNA models (sample size: 1762) ...
 No. Model         -LnL         df  AIC          AICc         BIC
  1  JC            4431.044     187 9236.088     9280.759     10259.765
  2  JC+I          4360.485     188 9096.969     9142.147     10126.120
  3  JC+G4         4362.344     188 9100.688     9145.865     10129.838
  4  JC+I+G4       4354.125     189 9086.250     9131.937     10120.875
  5  JC+R2         4331.982     189 9041.964     9087.651     10076.589
  6  JC+R3         4331.924     191 9045.848     9092.564     10091.421
 14  F81+F         4431.085     190 9242.169     9288.369     10282.268
 15  F81+F+I       4360.917     191 9103.835     9150.551     10149.408
 16  F81+F+G4      4362.701     191 9107.402     9154.118     10152.975
 17  F81+F+I+G4    4354.500     192 9092.999     9140.235     10144.047
 18  F81+F+R2      4332.591     192 9049.181     9096.417     10100.229
 19  F81+F+R3      4332.590     194 9053.180     9101.463     10115.176
 27  K2P           4386.004     188 9148.009     9193.186     10177.159
 28  K2P+I         4315.641     189 9009.282     9054.969     10043.906
 29  K2P+G4        4317.437     189 9012.875     9058.562     10047.499
 30  K2P+I+G4      4309.096     190 8998.192     9044.392     10038.291
 31  K2P+R2        4286.908     190 8953.816     9000.016     9993.915
 32  K2P+R3        4286.908     192 8957.816     9005.051     10008.863
 40  HKY+F         4386.525     191 9155.051     9201.767     10200.624
 41  HKY+F+I       4315.468     192 9014.936     9062.171     10065.983
 42  HKY+F+G4      4317.400     192 9018.800     9066.035     10069.847
 43  HKY+F+I+G4    4308.956     193 9003.912     9051.670     10060.434
 44  HKY+F+R2      4287.062     193 8960.125     9007.882     10016.646
 45  HKY+F+R3      4287.062     195 8964.125     9012.937     10031.595
 53  TNe           4366.237     189 9110.473     9156.160     10145.098
 54  TNe+I         4300.725     190 8981.450     9027.650     10021.549
 55  TNe+G4        4301.001     190 8982.001     9028.201     10022.100
 56  TNe+I+G4      4292.803     191 8967.606     9014.321     10013.179
 57  TNe+R2        4269.951     191 8921.902     8968.618     9967.475
 58  TNe+R3        4269.952     193 8925.903     8973.661     9982.425
 66  TN+F          4362.506     192 9109.013     9156.248     10160.060
 67  TN+F+I        4296.892     193 8979.784     9027.542     10036.306
 68  TN+F+G4       4297.087     193 8980.174     9027.932     10036.696
 69  TN+F+I+G4     4288.795     194 8965.589     9013.872     10027.585
 70  TN+F+R2       4266.059     194 8920.118     8968.401     9982.113
 71  TN+F+R3       4266.060     196 8924.120     8973.464     9997.064
 79  K3P           4385.893     189 9149.787     9195.474     10184.411
 80  K3P+I         4315.520     190 9011.041     9057.241     10051.140
 81  K3P+G4        4317.318     190 9014.636     9060.836     10054.735
 82  K3P+I+G4      4308.729     191 8999.459     9046.175     10045.032
 83  K3P+R2        4286.708     191 8955.415     9002.131     10000.988
 84  K3P+R3        4286.702     193 8959.404     9007.161     10015.925
 92  K3Pu+F        4386.414     192 9156.828     9204.063     10207.875
 93  K3Pu+F+I      4315.358     193 9016.716     9064.473     10073.237
 94  K3Pu+F+G4     4317.289     193 9020.578     9068.336     10077.100
 95  K3Pu+F+I+G4   4308.600     194 9005.200     9053.483     10067.196
 96  K3Pu+F+R2     4286.872     194 8961.743     9010.027     10023.739
 97  K3Pu+F+R3     4286.872     196 8965.744     9015.088     10038.688
105  TPM2+F        4386.263     192 9156.526     9203.761     10207.573
106  TPM2+F+I      4315.342     193 9016.684     9064.442     10073.206
107  TPM2+F+G4     4317.252     193 9020.504     9068.261     10077.025
108  TPM2+F+I+G4   4308.530     194 9005.060     9053.344     10067.056
109  TPM2+F+R2     4286.779     194 8961.558     9009.841     10023.553
110  TPM2+F+R3     4286.779     196 8965.558     9014.902     10038.502
118  TPM2u+F       4386.263     192 9156.527     9203.762     10207.574
119  TPM2u+F+I     4315.342     193 9016.684     9064.442     10073.205
120  TPM2u+F+G4    4317.252     193 9020.504     9068.261     10077.025
121  TPM2u+F+I+G4  4308.490     194 9004.979     9053.262     10066.975
122  TPM2u+F+R2    4286.779     194 8961.558     9009.841     10023.554
123  TPM2u+F+R3    4286.779     196 8965.558     9014.902     10038.502
131  TPM3+F        4386.328     192 9156.656     9203.891     10207.703
132  TPM3+F+I      4315.102     193 9016.203     9063.961     10072.725
133  TPM3+F+G4     4317.069     193 9020.139     9067.897     10076.660
134  TPM3+F+I+G4   4308.220     194 9004.439     9052.723     10066.435
135  TPM3+F+R2     4286.687     194 8961.374     9009.658     10023.370
136  TPM3+F+R3     4286.687     196 8965.375     9014.719     10038.319
144  TPM3u+F       4386.329     192 9156.658     9203.893     10207.706
145  TPM3u+F+I     4315.103     193 9016.205     9063.963     10072.727
146  TPM3u+F+G4    4317.066     193 9020.133     9067.890     10076.654
147  TPM3u+F+I+G4  4308.181     194 9004.362     9052.645     10066.358
148  TPM3u+F+R2    4286.687     194 8961.374     9009.657     10023.369
149  TPM3u+F+R3    4286.687     196 8965.374     9014.718     10038.318
157  TIMe          4366.121     190 9112.242     9158.442     10152.341
158  TIMe+I        4300.597     191 8983.195     9029.911     10028.768
159  TIMe+G4       4300.874     191 8983.748     9030.464     10029.321
160  TIMe+I+G4     4292.312     192 8968.623     9015.859     10019.671
161  TIMe+R2       4269.761     192 8923.522     8970.758     9974.570
162  TIMe+R3       4269.763     194 8927.525     8975.808     9989.521
170  TIM+F         4362.397     193 9110.795     9158.552     10167.316
171  TIM+F+I       4296.781     194 8981.562     9029.846     10043.558
172  TIM+F+G4      4296.974     194 8981.948     9030.231     10043.943
173  TIM+F+I+G4    4288.325     195 8966.651     9015.463     10034.121
174  TIM+F+R2      4265.888     195 8921.775     8970.587     9989.245
175  TIM+F+R3      4265.888     197 8925.776     8975.656     10004.194
183  TIM2e         4365.864     190 9111.728     9157.928     10151.827
184  TIM2e+I       4300.497     191 8982.994     9029.710     10028.567
185  TIM2e+G4      4300.745     191 8983.490     9030.206     10029.063
186  TIM2e+I+G4    4292.155     192 8968.309     9015.545     10019.357
187  TIM2e+R2      4269.589     192 8923.177     8970.412     9974.224
188  TIM2e+R3      4269.588     194 8927.176     8975.459     9989.171
196  TIM2+F        4362.257     193 9110.514     9158.271     10167.035
197  TIM2+F+I      4296.767     194 8981.535     9029.818     10043.531
198  TIM2+F+G4     4296.940     194 8981.879     9030.163     10043.875
199  TIM2+F+I+G4   4288.257     195 8966.513     9015.325     10033.983
200  TIM2+F+R2     4265.851     195 8921.701     8970.514     9989.171
201  TIM2+F+R3     4265.851     197 8925.702     8975.582     10004.121
209  TIM3e         4366.165     190 9112.329     9158.529     10152.428
210  TIM3e+I       4300.552     191 8983.104     9029.820     10028.677
211  TIM3e+G4      4300.848     191 8983.696     9030.412     10029.269
212  TIM3e+I+G4    4292.161     192 8968.321     9015.556     10019.368
213  TIM3e+R2      4269.821     192 8923.642     8970.877     9974.690
214  TIM3e+R3      4269.820     194 8927.640     8975.924     9989.636
222  TIM3+F        4362.308     193 9110.616     9158.373     10167.137
223  TIM3+F+I      4296.496     194 8980.992     9029.275     10042.988
224  TIM3+F+G4     4296.715     194 8981.431     9029.714     10043.426
225  TIM3+F+I+G4   4287.899     195 8965.799     9014.611     10033.269
226  TIM3+F+R2     4265.730     195 8921.460     8970.273     9988.930
227  TIM3+F+R3     4265.731     197 8925.463     8975.343     10003.881
235  TVMe          4385.393     191 9152.785     9199.501     10198.359
236  TVMe+I        4315.037     192 9014.075     9061.310     10065.122
237  TVMe+G4       4316.834     192 9017.668     9064.903     10068.715
238  TVMe+I+G4     4307.694     193 9001.387     9049.145     10057.909
239  TVMe+R2       4286.035     193 8958.070     9005.828     10014.592
240  TVMe+R3       4286.032     195 8962.065     9010.877     10029.535
248  TVM+F         4385.926     194 9159.851     9208.135     10221.847
249  TVM+F+I       4314.810     195 9019.621     9068.433     10087.091
250  TVM+F+G4      4316.760     195 9023.521     9072.333     10090.991
251  TVM+F+I+G4    4307.496     196 9006.991     9056.336     10079.935
252  TVM+F+R2      4286.164     196 8964.327     9013.672     10037.272
253  TVM+F+R3      4286.164     198 8968.328     9018.746     10052.220
261  SYM           4365.642     192 9115.283     9162.518     10166.330
262  SYM+I         4300.143     193 8986.286     9034.044     10042.807
263  SYM+G4        4300.416     193 8986.833     9034.590     10043.354
264  SYM+I+G4      4291.538     194 8971.076     9019.359     10033.072
265  SYM+R2        4269.242     194 8926.483     8974.766     9988.479
266  SYM+R3        4269.240     196 8930.480     8979.824     10003.424
274  GTR+F         4361.928     195 9113.855     9162.668     10181.325
275  GTR+F+I       4296.210     196 8984.419     9033.764     10057.363
276  GTR+F+G4      4296.416     196 8984.831     9034.176     10057.775
277  GTR+F+I+G4    4287.379     197 8968.758     9018.638     10047.176
278  GTR+F+R2      4265.310     197 8924.619     8974.499     10003.037
279  GTR+F+R3      4265.311     199 8928.622     8979.582     10017.989
Akaike Information Criterion:           TN+F+R2
Corrected Akaike Information Criterion: TN+F+R2
Bayesian Information Criterion:         TNe+R2
Best-fit model: TNe+R2 chosen according to BIC

All model information printed to Pettalidae_18S_mafft_gblocks.fasta.model.gz
CPU time for ModelFinder: 5.212 seconds (0h:0m:5s)
Wall-clock time for ModelFinder: 5.374 seconds (0h:0m:5s)
Generating 1000 samples for ultrafast bootstrap (seed: 59990)...

NOTE: 2 MB RAM (0 GB) is required!
Estimate model parameters (epsilon = 0.100)
1. Initial log-likelihood: -4405.776
2. Current log-likelihood: -4336.234
3. Current log-likelihood: -4333.760
4. Current log-likelihood: -4331.114
5. Current log-likelihood: -4328.286
6. Current log-likelihood: -4325.431
7. Current log-likelihood: -4322.663
8. Current log-likelihood: -4319.746
9. Current log-likelihood: -4316.632
10. Current log-likelihood: -4313.372
11. Current log-likelihood: -4309.981
12. Current log-likelihood: -4306.512
13. Current log-likelihood: -4303.057
14. Current log-likelihood: -4299.817
15. Current log-likelihood: -4296.877
16. Current log-likelihood: -4294.306
17. Current log-likelihood: -4292.085
18. Current log-likelihood: -4290.096
19. Current log-likelihood: -4288.179
20. Current log-likelihood: -4286.151
21. Current log-likelihood: -4283.867
22. Current log-likelihood: -4281.328
23. Current log-likelihood: -4278.574
24. Current log-likelihood: -4275.769
25. Current log-likelihood: -4273.216
26. Current log-likelihood: -4271.269
27. Current log-likelihood: -4270.426
28. Current log-likelihood: -4270.088
Optimal log-likelihood: -4269.991
Rate parameters:  A-C: 1.00000  A-G: 1.76856  A-T: 1.00000  C-G: 1.00000  C-T: 5.31463  G-T: 1.00000
Base frequencies:  A: 0.250  C: 0.250  G: 0.250  T: 0.250
Site proportion and rates:  (0.973,0.574) (0.027,16.298)
Parameters optimization took 28 rounds (0.630 sec)
Computing ML distances based on estimated model parameters... 0.032 sec
Computing BIONJ tree...
0.038 seconds
Log-likelihood of BIONJ tree: -4272.466
--------------------------------------------------------------------
|             INITIALIZING CANDIDATE TREE SET                      |
--------------------------------------------------------------------
Generating 98 parsimony trees... 0.462 second
Computing log-likelihood of 98 initial trees ... 0.758 seconds
Current best score: -4264.406

Do NNI search on 20 best initial trees
Estimate model parameters (epsilon = 0.100)
BETTER TREE FOUND at iteration 1: -4264.379
BETTER TREE FOUND at iteration 2: -4264.377
Iteration 10 / LogL: -4268.933 / Time: 0h:0m:3s
Estimate model parameters (epsilon = 0.100)
BETTER TREE FOUND at iteration 13: -4263.860
Iteration 20 / LogL: -4268.854 / Time: 0h:0m:4s
Finish initializing candidate tree set (20)
Current best tree score: -4263.860 / CPU time: 4.246
Number of iterations: 20
--------------------------------------------------------------------
|               OPTIMIZING CANDIDATE TREE SET                      |
--------------------------------------------------------------------
Estimate model parameters (epsilon = 0.100)
BETTER TREE FOUND at iteration 26: -4263.214
Iteration 30 / LogL: -4267.714 / Time: 0h:0m:6s (0h:0m:22s left)
BETTER TREE FOUND at iteration 38: -4263.213
Iteration 40 / LogL: -4269.415 / Time: 0h:0m:8s (0h:0m:21s left)
Estimate model parameters (epsilon = 0.100)
BETTER TREE FOUND at iteration 42: -4262.711
BETTER TREE FOUND at iteration 49: -4262.709
Iteration 50 / LogL: -4265.640 / Time: 0h:0m:10s (0h:0m:20s left)
Log-likelihood cutoff on original alignment: -4289.972
Iteration 60 / LogL: -4282.054 / Time: 0h:0m:11s (0h:0m:17s left)
Estimate model parameters (epsilon = 0.100)
BETTER TREE FOUND at iteration 65: -4262.535
Iteration 70 / LogL: -4263.208 / Time: 0h:0m:13s (0h:0m:18s left)
Iteration 80 / LogL: -4266.102 / Time: 0h:0m:15s (0h:0m:16s left)
Estimate model parameters (epsilon = 0.100)
BETTER TREE FOUND at iteration 87: -4262.481
Iteration 90 / LogL: -4262.543 / Time: 0h:0m:16s (0h:0m:18s left)
BETTER TREE FOUND at iteration 92: -4262.473
Iteration 100 / LogL: -4262.552 / Time: 0h:0m:18s (0h:0m:17s left)
Log-likelihood cutoff on original alignment: -4290.749
NOTE: Bootstrap correlation coefficient of split occurrence frequencies: 0.985
NOTE: UFBoot does not converge, continue at least 100 more iterations
Iteration 110 / LogL: -4275.456 / Time: 0h:0m:20s (0h:0m:17s left)
Iteration 120 / LogL: -4265.372 / Time: 0h:0m:22s (0h:0m:14s left)
Iteration 130 / LogL: -4262.543 / Time: 0h:0m:23s (0h:0m:13s left)
Iteration 140 / LogL: -4262.482 / Time: 0h:0m:25s (0h:0m:11s left)
Iteration 150 / LogL: -4264.161 / Time: 0h:0m:27s (0h:0m:9s left)
Log-likelihood cutoff on original alignment: -4290.904
Iteration 160 / LogL: -4262.588 / Time: 0h:0m:29s (0h:0m:7s left)
BETTER TREE FOUND at iteration 165: -4262.473
BETTER TREE FOUND at iteration 170: -4262.472
Iteration 170 / LogL: -4262.472 / Time: 0h:0m:31s (0h:0m:18s left)
BETTER TREE FOUND at iteration 179: -4262.472
Iteration 180 / LogL: -4273.302 / Time: 0h:0m:33s (0h:0m:18s left)
Iteration 190 / LogL: -4341.737 / Time: 0h:0m:34s (0h:0m:16s left)
Iteration 200 / LogL: -4262.539 / Time: 0h:0m:36s (0h:0m:14s left)
Log-likelihood cutoff on original alignment: -4290.749
NOTE: Bootstrap correlation coefficient of split occurrence frequencies: 0.994
Iteration 210 / LogL: -4264.154 / Time: 0h:0m:38s (0h:0m:16s left)
Iteration 220 / LogL: -4265.637 / Time: 0h:0m:40s (0h:0m:14s left)
Iteration 230 / LogL: -4264.832 / Time: 0h:0m:42s (0h:0m:12s left)
BETTER TREE FOUND at iteration 240: -4262.471
Iteration 240 / LogL: -4262.471 / Time: 0h:0m:43s (0h:0m:18s left)
BETTER TREE FOUND at iteration 250: -4262.467
Iteration 250 / LogL: -4262.467 / Time: 0h:0m:45s (0h:0m:18s left)
Log-likelihood cutoff on original alignment: -4290.749
Iteration 260 / LogL: -4262.536 / Time: 0h:0m:47s (0h:0m:16s left)
Iteration 270 / LogL: -4292.579 / Time: 0h:0m:49s (0h:0m:14s left)
Iteration 280 / LogL: -4264.149 / Time: 0h:0m:51s (0h:0m:12s left)
BETTER TREE FOUND at iteration 288: -4262.466
Iteration 290 / LogL: -4267.622 / Time: 0h:0m:53s (0h:0m:18s left)
Iteration 300 / LogL: -4263.715 / Time: 0h:0m:55s (0h:0m:16s left)
Log-likelihood cutoff on original alignment: -4289.580
NOTE: Bootstrap correlation coefficient of split occurrence frequencies: 0.992
Iteration 310 / LogL: -4262.515 / Time: 0h:0m:57s (0h:0m:16s left)
Iteration 320 / LogL: -4263.031 / Time: 0h:0m:59s (0h:0m:14s left)
Iteration 330 / LogL: -4264.151 / Time: 0h:1m:1s (0h:0m:12s left)
Iteration 340 / LogL: -4263.033 / Time: 0h:1m:3s (0h:0m:11s left)
Iteration 350 / LogL: -4266.144 / Time: 0h:1m:4s (0h:0m:9s left)
Log-likelihood cutoff on original alignment: -4289.580
Iteration 360 / LogL: -4263.220 / Time: 0h:1m:7s (0h:0m:7s left)
Iteration 370 / LogL: -4264.831 / Time: 0h:1m:9s (0h:0m:5s left)
Iteration 380 / LogL: -4279.004 / Time: 0h:1m:11s (0h:0m:3s left)
TREE SEARCH COMPLETED AFTER 389 ITERATIONS / Time: 0h:1m:13s

--------------------------------------------------------------------
|                    FINALIZING TREE SEARCH                        |
--------------------------------------------------------------------
Performs final model parameters optimization
Estimate model parameters (epsilon = 0.010)
1. Initial log-likelihood: -4262.466
Optimal log-likelihood: -4262.466
Rate parameters:  A-C: 1.00000  A-G: 1.77545  A-T: 1.00000  C-G: 1.00000  C-T: 5.28676  G-T: 1.00000
Base frequencies:  A: 0.250  C: 0.250  G: 0.250  T: 0.250
Site proportion and rates:  (0.975,0.591) (0.025,16.780)
Parameters optimization took 1 rounds (0.013 sec)
BEST SCORE FOUND : -4262.466

Testing tree branches by SH-like aLRT with 1000 replicates...
1.250 sec.
Creating bootstrap support values...
Split supports printed to NEXUS file Pettalidae_18S_mafft_gblocks.fasta.splits.nex
Total tree length: 0.177

Total number of iterations: 389
CPU time used for tree search: 71.556 sec (0h:1m:11s)
Wall-clock time used for tree search: 72.385 sec (0h:1m:12s)
Total CPU time used: 73.744 sec (0h:1m:13s)
Total wall-clock time used: 74.822 sec (0h:1m:14s)

Computing bootstrap consensus tree...
Reading input file Pettalidae_18S_mafft_gblocks.fasta.splits.nex...
95 taxa and 1517 splits.
Consensus tree written to Pettalidae_18S_mafft_gblocks.fasta.contree
Reading input trees file Pettalidae_18S_mafft_gblocks.fasta.contree
Log-likelihood of consensus tree: -4262.531

Analysis results written to: 
  IQ-TREE report:                Pettalidae_18S_mafft_gblocks.fasta.iqtree
  Maximum-likelihood tree:       Pettalidae_18S_mafft_gblocks.fasta.treefile
  Likelihood distances:          Pettalidae_18S_mafft_gblocks.fasta.mldist

Ultrafast bootstrap approximation results written to:
  Split support values:          Pettalidae_18S_mafft_gblocks.fasta.splits.nex
  Consensus tree:                Pettalidae_18S_mafft_gblocks.fasta.contree
  Screen log file:               Pettalidae_18S_mafft_gblocks.fasta.log

Date and Time: Wed Jun 15 22:55:35 2022
